Deceit: A flexible distributed file system

Deceit, a distributed file system (DFS) being developed at Cornell, focuses on flexible file semantics in relation to efficiency, scalability, and reliability. Deceit servers are interchangeable and collectively provide the illusion of a single, large server machine to any clients of the Deceit service. Non-volatile replicas of each file are stored on a subset of the file servers. The user is able to set parameters on a file to achieve different levels of availability, performance, and one-copy serializability. Deceit also supports a file version control mechanism. In contrast with many recent DFS efforts, Deceit can behave like a plain Sun Network File System (NFS) server and can be used by any NFS client without modifying any client software. The current Deceit prototype uses the ISIS Distributed Programming Environment for all communication and process group management, an approach that reduces system complexity and increases system robustness

Robots and Robots and More

Over the course of this year I worked on several projects across different departments, from physical robots at Swamp Works, to automated robots running functional tests on launch critical Graphical User Interfaces (GUIs). My overarching project this year was designing a new automated testing framework. It began with becoming familiar with the existing automated testing framework, which used image matching to perform programmatic GUI testing. After writing a few dozen tests with the existing framework, I was able to identify the strengths and weaknesses of the system and begin the search for another tool to replace it. I ended up selecting an open source library, which I modified to fit both National Aeronautics and Space Administration (NASA) requirements and those of the specific Computer Software Configuration Item (CSCI) I worked on. After the new framework was feature-rich enough to meet the team requirements, I helped roll out the changes, managed the transition to the new framework, and directed continuing automation work in regards to the library. The result was a comprehensive new way of efficiently testing the GUI that was robust enough to handle small changes to the GUI itself. Additionally, for approximately six weeks I worked on rebuilding, repairing, and updating the software of four "Swarmie" robots for a NASA event. By the close of the six weeks, the four robots were operational and had improved obstacle detection software that solved a faulty stop signal issue that the robots were experiencing

Rich or thin?

Siegel and Byrne debate whether perceptual experiences present rich properties or exclusively thin propertie

The Evolution of the Far-UV Luminosity Function and Star Formation Rate Density of the Chandra Deep Field South from z=0.2-1.2 with Swift/UVOT

We use deep Swift UV/Optical Telescope (UVOT) near-ultraviolet (1600A to 4000A) imaging of the Chandra Deep Field South to measure the rest-frame far-UV (FUV; 1500A) luminosity function (LF) in four redshift bins between z=0.2 and 1.2. Our sample includes 730 galaxies with u < 24.1 mag. We use two methods to construct and fit the LFs: the traditional V_max method with bootstrap errors and a maximum likelihood estimator. We observe luminosity evolution such that M* fades by ~2 magnitudes from z~1 to z~0.3 implying that star formation activity was substantially higher at z~1 than today. We integrate our LFs to determine the FUV luminosity densities and star formation rate densities from z=0.2 to 1.2. We find evolution consistent with an increase proportional to (1+z)^1.9 out to z~1. Our luminosity densities and star formation rates are consistent with those found in the literature, but are, on average, a factor of ~2 higher than previous FUV measurements. In addition, we combine our UVOT data with the MUSYC survey to model the galaxies' ultraviolet-to-infrared spectral energy distributions and estimate the rest-frame FUV attenuation. We find that accounting for the attenuation increases the star formation rate densities by ~1 dex across all four redshift bins.Comment: 20 pages, 8 figures, 6 tables; accepted for publication in Ap

Isolation of a strong Arabidopsis guard cell promoter and its potential as a research tool

<p>Abstract</p> <p>Background</p> <p>A common limitation in guard cell signaling research is that it is difficult to obtain consistent high expression of transgenes of interest in <it>Arabidopsis </it>guard cells using known guard cell promoters or the constitutive 35S cauliflower mosaic virus promoter. An additional drawback of the 35S promoter is that ectopically expressing a gene throughout the organism could cause pleiotropic effects. To improve available methods for targeted gene expression in guard cells, we isolated strong guard cell promoter candidates based on new guard cell-specific microarray analyses of 23,000 genes that are made available together with this report.</p> <p>Results</p> <p>A promoter, <it>pGC1</it>(At1g22690), drove strong and relatively specific reporter gene expression in guard cells including GUS (beta-glucuronidase) and yellow cameleon YC3.60 (GFP-based calcium FRET reporter). Reporter gene expression was weaker in immature guard cells. The expression of YC3.60 was sufficiently strong to image intracellular Ca²⁺dynamics in guard cells of intact plants and resolved spontaneous calcium transients in guard cells. The <it>GC1 </it>promoter also mediated strong reporter expression in clustered stomata in the stomatal development mutant <it>too-many-mouths </it>(<it>tmm</it>). Furthermore, the same promoter::reporter constructs also drove guard cell specific reporter expression in tobacco, illustrating the potential of this promoter as a method for high level expression in guard cells. A serial deletion of the promoter defined a guard cell expression promoter region. In addition, anti-sense repression using <it>pGC1 </it>was powerful for reducing specific GFP gene expression in guard cells while expression in leaf epidermal cells was not repressed, demonstrating strong cell-type preferential gene repression.</p> <p>Conclusion</p> <p>The <it>pGC1 </it>promoter described here drives strong reporter expression in guard cells of <it>Arabidopsis </it>and tobacco plants. It provides a potent research tool for targeted guard cell expression or gene silencing. It is also applicable to reduce specific gene expression in guard cells, providing a method for circumvention of limitations arising from genetic redundancy and lethality. These advances could be very useful for manipulating signaling pathways in guard cells and modifying plant performance under stress conditions. In addition, new guard cell and mesophyll cell-specific 23,000 gene microarray data are made publicly available here.</p

Chloroplast SRP43 acts as a chaperone for glutamyl-tRNA reductase, the rate-limiting enzyme in tetrapyrrole biosynthesis

Assembly of light-harvesting complexes requires synchronization of chlorophyll (Chl) biosynthesis with biogenesis of light-harvesting Chl a/b-binding proteins (LHCPs). The chloroplast signal recognition particle (cpSRP) pathway is responsible for transport of nucleus-encoded LHCPs in the stroma of the plastid and their integration into the thylakoid membranes. Correct folding and assembly of LHCPs require the incorporation of Chls, whose biosynthesis must therefore be precisely coordinated with membrane insertion of LHCPs. How the spatiotemporal coordination between the cpSRP machinery and Chl biosynthesis is achieved is poorly understood. In this work, we demonstrate a direct interaction between cpSRP43, the chaperone that mediates LHCP targeting and insertion, and glutamyl-tRNA reductase (GluTR), a rate-limiting enzyme in tetrapyrrole biosynthesis. Concurrent deficiency for cpSRP43 and the GluTR-binding protein (GBP) additively reduces GluTR levels, indicating that cpSRP43 and GBP act nonredundantly to stabilize GluTR. The substrate-binding domain of cpSRP43 binds to the N-terminal region of GluTR, which harbors aggregation-prone motifs, and the chaperone activity of cpSRP43 efficiently prevents aggregation of these regions. Our work thus reveals a function of cpSRP43 in Chl biosynthesis and suggests a striking mechanism for posttranslational coordination of LHCP insertion with Chl biosynthesis

Vacuum Instability in Topologically Massive Gauge Theory

We find the critical charge for a topologically massive gauge theory for any gauge group, generalising our earlier result for SU(2). The relation between critical charges in TMGT, singular vectors in the WZNW model and logarithmic CFT is investigated.Comment: 14 pages, Late

A robust experimental evaluation of automated multi-label classification methods

Automated Machine Learning (AutoML) has emerged to deal with the selection and configuration of algorithms for a given learning task. With the progression of AutoML, several effective methods were introduced, especially for traditional classification and regression problems. Apart from the AutoML success, several issues remain open. One issue, in particular, is the lack of ability of AutoML methods to deal with different types of data. Based on this scenario, this paper approaches AutoML for multi-label classification (MLC) problems. In MLC, each example can be simultaneously associated to several class labels, unlike the standard classification task, where an example is associated to just one class label. In this work, we provide a general comparison of five automated multi-label classification methods - two evolutionary methods, one Bayesian optimization method, one random search and one greedy search - on 14 datasets and three designed search spaces. Overall, we observe that the most prominent method is the one based on a canonical grammar-based genetic programming (GGP) search method, namely Auto-MEKAGGP. Auto-MEKAGGP presented the best average results in our comparison and was statistically better than all the other methods in different search spaces and evaluated measures, except when compared to the greedy search method

Curvature-Induced Defect Unbinding in Toroidal Geometries

Toroidal templates such as vesicles with hexatic bond orientational order are discussed. The total energy including disclination charges is explicitly computed for hexatic order embedded in a toroidal geometry. Related results apply for tilt or nematic order on the torus in the one Frank constant approximation. Although there is no topological necessity for defects in the ground state, we find that excess disclination defects are nevertheless energetically favored for fat torii or moderate vesicle sizes. Some experimental consequences are discussed.Comment: 12 pages, 15 eps figure